YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAHC_PEA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSSINGFS LSSLSPAKTS TKRTTLRPFV SASLNTSSSS SSSTFPSLIQ DKPVFASSSP  60
   61 IITPVLREEM GKGYDEAIEE LQKLLREKTE LKATAAEKVE QITAQLGTTS SSDGIPKSEA 120
  121 SERIKTGFLH FKKEKYDKNP ALYGELAKGQ SPPFMVFACS DSRVCPSHVL DFQPGEAFVV 180
  181 RNVANLVPPY DQAKYAGTGA AIEYAVLHLK VSNIVVIGHS ACGGIKGLLS FPFDGTYSTD 240
  241 FIEEWVKIGL PAKAKVKAQH GDAPFAELCT HCEKEAVNAS LGNLLTYPFV REGLVNKTLA 300
  301 LKGGYYDFVK GSFELWGLEF GLSSTFSV

Type	Start	End	Confidence
Signal Peptide	1	42	0.71
N-region	1	33
H-region	34	39
C-region	40	42
Cleavage Site	42	43
Non-Cytoplasmic	43	328	0.99