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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CO1A2_LITCT
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFVDLRSV LLLAVTLYLV TCQEVRRGPR GDKGPPGEQG PPGIPGRDGE DGLPGLPGPP  60
   61 GVPGLGGNFA AQYDPSKSAE PGQQGIMGPR GPPGPPGSPG SQGFQGLPGE NGEPGQTGPV 120
  121 GSRGPSGAPG KAGEDGHPGK SGRPGERGPV GPQGARGFPG TPGLPGFKGI RGHTGSDGQK 180
  181 GAPGAAGVKG ENGANGDNGS PGQAGARGLP GERGRIGPAG SAGSRGSDGS SGPVGPAGPI 240
  241 GSAGAPGLPG APGAKGELGP AGNNGPTGAA GGRGEPGPPG SLGPAGPPGN PGTNGVNGAK 300
  301 GTAGLPGVGG APGLPGGRGI PGPAGPAGPS GARGLAGDPG IAGGKGDTGS KGEPGSVGQQ 360
  361 GPAGPSGEEG KRGPNGEAGS SGPSGNAGIR GVPGTRGLPG PDGRAGGIGP AGSRGSSGPP 420
  421 GARGPNGDAG RPGEPGLLGA RGLPGFSGSN GPQGKEGPAG PQGIEGRSGA AGPAGARGEP 480
  481 GAIGFPGPKG PNGEPGKNGD KGNQGPSGNR GAPGPDGNNG AQGPAGLGGA TGEKGEQGPS 540
  541 GAPGFQGLPG PGGPPGEVGK PGERGAPGDF GPPGSAGTRG ERGAPGESGG AGPHGPSGSR 600
  601 GPSGAPGPDG QKGEPGAAGL NGGLGPSGPA GIPGERGTAG TPGTKGEKGD AGNSGDYGNP 660
  661 GRDGARGPAG AAGAPGPAGG PGDRGESGPA GPSGVAGPRG APGERGEAGP AGPTGFAGPP 720
  721 GAAGHTGAKG DRGAKGPKGE AGSPGPLGAH GSAGPAGPNG PAGSTGARGD AGPSGATGFP 780
  781 GPAGRAGAPG PPGNVGPSGP TGHPGKDGSR GPRGDSGPVG RPGEQGQHGP VGLAGDKGPS 840
  841 GEAGPAGPPG AAGPSGVLGA RGILGLPGTR GERGLPGGPG SNGEPGPSGL AGSSGPRGPP 900
  901 GSVGSPGPVG HSGEAGRDGH PGNDGPPGRD GLPGAKGERG YPGNTGPSGL AGAPGPAGSA 960
  961 GPAGKSGNRG EGGPSGPAGI TGPSGPRGPA GPQGVRGDKG EAGERGARGL DGRKGHNGLS1020
 1021 GLPGPSGTPG ETGPSGSVGP VGPRGPSGPS GPPGKEGRSG HPGAMGPVGP RGPAGFTGPA1080
 1081 GPPGPPGPPG HAGPSGGGYD GGDGGEYYRA DQPERKPKDY EVDATLKSLN QQIEVILTPE1140
 1141 GSRKNPARTC RDLRLSHPEW TSGFYWIDPN QGCTSDAIRV FCDFSSGETC IHANPDEITQ1200
 1201 KNWYINTSNK DKKHLWFGEI LNGGTQFEYH DEGLTAKDMA TQLAFMRLLA NQASQNITYH1260
 1261 CKNSIAYMDE ETGNLKKAVI LQGSNDVELR AEGNTRFTYS VLEDGCTKHT GEWGKTVIEY1320
 1321 RTNKPSRLPI LDIAPLDIGG HDQEIGFEIG PVCFK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle