YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C71B4_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.68
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLLSFFLL LLVPIFFLLI FTKKIKESKQ NLPPGPAKLP IIGNLHQLQG LLHKCLHDLS  60
   61 KKHGPVMHLR LGFAPMVVIS SSEAAEEALK THDLECCSRP ITMASRVFSR NGKDIGFGVY 120
  121 GDEWRELRKL SVREFFSVKK VQSFKYIREE ENDLMIKKLK ELASKQSPVD LSKILFGLTA 180
  181 SIIFRTAFGQ SFFDNKHVDQ ESIKELMFES LSNMTFRFSD FFPTAGLKWF IGFVSGQHKR 240
  241 LYNVFNRVDT FFNHIVDDHH SKKATQDRPD MVDAILDMID NEQQYASFKL TVDHLKGVLS 300
  301 NIYHAGIDTS AITLIWAMAE LVRNPRVMKK AQDEIRTCIG IKQEGRIMEE DLDKLQYLKL 360
  361 VVKETLRLHP AAPLLLPRET MADIKIQGYD IPQKRALLVN AWSIGRDPES WKNPEEFNPE 420
  421 RFIDCPVDYK GHSFELLPFG SGRRICPGIA MAIATIELGL LNLLYFFDWN MPEKKKDMDM 480
  481 EEAGDLTVDK KVPLELLPVI RISL

Type	Start	End	Confidence
Signal Peptide	1	22	0.91
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	447	0.96
Transmembrane Helix	448	467	0.69
Cytoplasmic	468	504	0.68