YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C5AR_MOUSE, C5AR...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSFEINYD HYGTMDPNIP ADGIHLPKRQ PGDVAALIIY SVVFLVGVPG NALVVWVTAF  60
   61 EPDGPSNAIW FLNLAVADLL SCLAMPVLFT TVLNHNYWYF DATACIVLPS LILLNMYASI 120
  121 LLLATISADR FLLVFKPIWC QKVRGTGLAW MACGVAWVLA LLLTIPSFVY REAYKDFYSE 180
  181 HTVCGINYGG GSFPKEKAVA ILRLMVGFVL PLLTLNICYT FLLLRTWSRK ATRSTKTLKV 240
  241 VMAVVICFFI FWLPYQVTGV MIAWLPPSSP TLKRVEKLNS LCVSLAYINC CVNPIIYVMA 300
  301 GQGFHGRLLR SLPSIIRNAL SEDSVGRDSK TFTPSTDDTS PRKSQAV

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.83
Transmembrane Helix	36	60	0.89
Cytoplasmic	61	68	0.81
Transmembrane Helix	69	90	0.89
Non-Cytoplasmic	91	103	0.72
Transmembrane Helix	104	126	0.86
Cytoplasmic	127	145	0.80
Transmembrane Helix	146	169	0.89
Non-Cytoplasmic	170	199	0.94
Transmembrane Helix	200	223	0.90
Cytoplasmic	224	239	0.83
Transmembrane Helix	240	259	0.90
Non-Cytoplasmic	260	284	0.80
Transmembrane Helix	285	304	0.70
Cytoplasmic	305	347	0.74