YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CY561_PIG
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESPAGRTPA PGALPYYVAF SQLLGLTVVA VTGAWLGAYR GGIAWESALQ FNVHPLCMII  60
   61 GLVFLQGDAL LVYRVFRNEA KRTTKILHGL LHVLAFVIAL VGLVAVFDYH RKKGIADLYS 120
  121 LHSWCGILVF VLFLAQWLVG LGFFLFPGAS FSLRSRYRPQ HVFFGAAIFL LSVGTALLGL 180
  181 KEALLFQLGT KYSAFESEGV LANVLGLLLV AFGAVVLYIL TRADWKRPLQ AEEQALSMDF 240
  241 KTLTEGDSPS SQ

Type	Start	End	Confidence
Cytoplasmic	1	15	0.91
Transmembrane Helix	16	38	0.91
Non-Cytoplasmic	39	52	0.85
Transmembrane Helix	53	76	0.85
Cytoplasmic	77	85	0.95
Transmembrane Helix	86	107	0.92
Non-Cytoplasmic	108	123	0.85
Transmembrane Helix	124	146	0.89
Cytoplasmic	147	160	0.81
Transmembrane Helix	161	180	0.95
Non-Cytoplasmic	181	199	0.88
Transmembrane Helix	200	221	0.94
Cytoplasmic	222	252	0.99