YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C560_CAEBR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINIPTSILC RLGARSAISR SFGTSVVTKS EAKTPIQKFG WEYLKKQRDM KRPIAPHLTI  60
   61 YQPQLTWMLS GFHRISGCVM AGTLLVGGLG FAVLPLDFTT FVEYIRGWNL PCAVTAVFKY 120
  121 IIAFPIIFHT LNGIRFLGFD LAKGVDNIGQ VYKSGWLVFG VSAVIALAIV INSCQNKSKA 180
  181 VKTA

Type	Start	End	Confidence
Cytoplasmic	1	71	0.60
Transmembrane Helix	72	96	0.84
Non-Cytoplasmic	97	109	0.44
Transmembrane Helix	110	139	0.63
Cytoplasmic	140	151	0.37
Transmembrane Helix	152	174	0.83
Non-Cytoplasmic	175	184	0.37