YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C560_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALLLRHVG RHCLRAHLSP QLCIRNAVPL GTTAKEEMER FWSKNTTLNR PLSPHISIYG  60
   61 WSLPMAMSIC HRGTGIALSA GVSLFGLSAL LVPGSFESHL EFVKSLCLGP ALIHTAKFAL 120
  121 VFPLMYHTWN GIRHLMWDLG KGLTISQLHQ SGVAVLVLTV LSSVGLAAM

Type	Start	End	Confidence
Cytoplasmic	1	72	0.83
Transmembrane Helix	73	92	0.92
Non-Cytoplasmic	93	105	0.64
Transmembrane Helix	106	129	0.78
Cytoplasmic	130	146	0.61
Transmembrane Helix	147	168	0.87
Non-Cytoplasmic	169	169	0.68