YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CD209_PAPHA
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEPRLQ QLGLLEEEQL RGVGFRQTRG YKSLAGCLGH GPLVLQLLSF TLLAGLLVQV  60
   61 SKVPSSLSQG QSKQDAIYQN LTQLKAAVSE LSEKSKLQEI YQELTRLKAA VGELPEKSKL 120
  121 QEIYQELTRL KAAVGELPEK SKQQEIYQEL TQLKAAVDGL PDRSKQQEIY QELTQLKAAV 180
  181 DGLPDRSKQQ EIYQELIQLK AAVERLCRPC PWEWTFFQGN CYFMSNSQRN WHNSITACQE 240
  241 VGAQLVVIKS AEEQNFLQLQ SSRSNRFTWM GLSDLNHEGT WQWVDGSPLL PSFKQYWNKG 300
  301 EPNNIGEEDC AEFSGNGWND DKCNLAKFWI CKKSAASCSG DEERLLSPAP TTPNPPPE

Type	Start	End	Confidence
Cytoplasmic	1	35	0.83
Transmembrane Helix	36	58	0.79
Non-Cytoplasmic	59	358	0.99