YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CD209_MACMU
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEPRLQ QLDLLEEEQL GGVGFRQTRG YKSLAGCLGH GPLVLQLLSF TLLAGLLVQV  60
   61 SKVPSSLSQG QSKQDAIYQN LTQLKVAVSE LSEKSKQQEI YQELTRLKAA VGELPEKSKQ 120
  121 QEIYEELTRL KAAVGELPEK SKLQEIYQEL TRLKAAVGEL PEKSKMQEIY QELSRLKAAV 180
  181 GDLPEKSKQQ EIYQELSRLK AAVGDLPEKS KQQEIYQKLT QLKAAVDGLP DRSKQQEIYQ 240
  241 ELIQLKAAVE RLCHPCPWEW TFFQGNCYFM SNSQRNWHDS ITACQEVGAQ LVVIKSAEEQ 300
  301 NFLQLQSSRS NRFTWMGLSD LNHEGTWQWV DGSPLLPSFK QYWNKGEPNN IGEEDCAEFS 360
  361 GNGWNDDKCN LAKFWICKKS AASCSGDEER LLSPAPTTPN PPPA

Type	Start	End	Confidence
Cytoplasmic	1	35	0.83
Transmembrane Helix	36	58	0.79
Non-Cytoplasmic	59	404	0.99