YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CD209_NOMCO
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEPSVQ QLGLLEEEQL RGLGFRQTRG YKSLAGCLGH GALVLQLLSF TLLAGLLIQV  60
   61 SKFPSSISQE QSKQDAIYQN LTQLKAAVGE LSEKSKLQEI YQELTQLKAA VGELPEKSKQ 120
  121 QEIYQELTQL KAAVGELPEK SKQQEIYQEL TQLKAAVGEL PEKSKQQEIY QELTRLKAAV 180
  181 GELPEKSQQQ EIYQELTQLK AAVGELPEKS KQQEIYQELT RLKAAVGELP EKSKQQEIYQ 240
  241 ELTQLKAAVE RLCRPCPWEW TFFQGNCYFM SNSQRDWHDS VTACQEVGAQ LVVIKSAEEQ 300
  301 NFLQLQSSRS NRFAWMGLSD LNQEGTWQWV DGSPLSPSFK QYWNRGEPNN VGEEDCAEFS 360
  361 GNGWNDDKCN LAKFWICKKS AASCSRDEEQ FLSPAPATPN PPPA

Type	Start	End	Confidence
Cytoplasmic	1	35	0.94
Transmembrane Helix	36	58	0.91
Non-Cytoplasmic	59	404	0.99