YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27356919
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEPRLQ QLGLLEEEQL RGLGFRQTRG YKSLAGCLGH GPLVLQLLSF TLLAALLVQV  60
   61 SKVPSSISQE QSRQDAIYQN LTQFKAAVGE LSEKSKLQEI YQELTQLKAA VGELPEKSKQ 120
  121 QEIYQELSQL KAAVGELPEK SKQQEIYQEL SQLKAAVGEL PEKSKQQEIY QELTRLKAAV 180
  181 GELPEKSKQQ EIYQELSQLK AAVGELPEKS KQQEIYQELS QLKAAVGELP EKSKQQEIYQ 240
  241 ELTQLKAAVG ELPEKSKQQE IYQELTQLKA AVERLCRRCP WEWTFFQGNC YFMSNSQRNW 300
  301 HDSITACQEV GAQLVVIKSA EEQNFLQLQS SRSNRFTWMG LSDLNHEGTW QWVDGSPLLP 360
  361 SFKQYWNRGE PNNVGEEDCA EFSGNGWNDD KCNLAKFWIC KKSAASCSRD EEQFLSPASA 420
  421 TPNPPPE

Type	Start	End	Confidence
Cytoplasmic	1	35	0.85
Transmembrane Helix	36	58	0.81
Non-Cytoplasmic	59	427	0.99