YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C1QA_PIG
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAPRGWLVI MISVLAVSLA SSAAQDTCRD LDGRDGAARK PGRPGRPGPK GERGEPGAPA  60
   61 FQTGIRGLKG DQGESGSPGK PGRMGYPGPS GPPGLPGLPG LKGIKGNPGN IKDQRRPAFS 120
  121 AVRQNPPTSG NVVIFDEVIT NQEGAYKSQL GQFICDVPGY YYFTFQVVSK WDLCLYIMSS 180
  181 RRDQVQQSLG FCDFNSKGLF QVVSGGTVLQ LQRGDKVWIQ RDPNKGRIYQ GSEADSVFSG 240
  241 FLIFPST

Type	Start	End	Confidence
Signal Peptide	1	24	0.97
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	247	0.99