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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: C166A_DANRE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSVICLFGA FIAAALFAPG SCLPTVIGLY GETIEVPCNN GNNKPDGLIF TKWKYAKDDG  60
   61 SPGDLLIKQA QKDDPTVSAM DGYKTRVSIA ANSSLLIAQG SLTDQRVFTC MVVSSTNLEE 120
  121 FSVEVKVHKK PSAPVIKNKV KELENGKLTQ LGECVVESAN PAADLIWMKN NQALVDDGKT 180
  181 IIITSDVTKD PVTGLSSTSS RLQYTARKED VASQFTCVAK HVTGPNQVST PDTFQIRYPT 240
  241 EKVSLQVVSQ SPIREGDDVT LKCQADGNPP PTSFNFNIKG KKVTVTDKDV YTLTGVTRAD 300
  301 SGVYKCSLLD NDVMESTQIV TVSFLDASLT PTGKVLKKLG ENLVVSLEKN ASSEVKVTWT 360
  361 KDNRKLDKLP DFSQLRYSDA GLYVCDVSIE GIKHSFSFEL TVEGGPRITG LTKHRSNDGK 420
  421 HKVLTCEAEG SPKPEVQWSV NGTDDETSYV NGKATYKLTV VPSKNLTVSC LVTNKLGFDT 480
  481 KDISVFSLFE EDKPKPGKNE DGADQAKVIV GVVVGLFLAA ALVGLIYWLY IKKTRQGSWK 540
  541 TGEKETGTSE ESKKLEENNH KADV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle