YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|213646009
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	33	0.88
Non-Cytoplasmic	34	41	0.86
Transmembrane Helix	42	64	0.91
Cytoplasmic	65	76	0.84
Transmembrane Helix	77	99	0.88
Non-Cytoplasmic	100	118	0.92
Transmembrane Helix	119	141	0.89
Cytoplasmic	142	150	0.86
Transmembrane Helix	151	172	0.90
Non-Cytoplasmic	173	193	0.86
Transmembrane Helix	194	213	0.93
Cytoplasmic	214	226	0.83
Transmembrane Helix	227	247	0.94
Non-Cytoplasmic	248	280	0.90
Transmembrane Helix	281	302	0.92
Cytoplasmic	303	313	0.75
Transmembrane Helix	314	337	0.84
Non-Cytoplasmic	338	340	0.65
Transmembrane Helix	341	363	0.84
Cytoplasmic	364	369	0.83
Transmembrane Helix	370	392	0.87
Non-Cytoplasmic	393	408	0.89
Transmembrane Helix	409	429	0.90
Cytoplasmic	430	439	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHQLKSRDI IALGFMTFAL FVGAGNIIFP PMVGLQAGEH VWTAAIGFLI TAVGLPVLTV  60
   61 VALAKVGGGV DSLSTPIGKV AGLLLATVCY LAVGPLFATP RTATVSFEVG IAPLTGDSAM 120
  121 PLLIYSVVYF AIVILVSLYP GKLLDTVGNF LAPLKIIALV ILSVAAIVWP AGPISNALDA 180
  181 YQNAAFSNGF VNGYLTMDTL GAMVFGIVIV NAARSRGVTE ARLLTRYTVW AGLMAGVGLT 240
  241 LLYLALFRLG SDSATLVDQS ANGAAILHAY VQHTFGGAGS FLLAALIFIA CLVTAVGLTC 300
  301 ACAEFFAQYI PLSYRTLVFI LGGFSMVVSN LGLSHLIQIS IPVLTAIYPP CIALVVLSFT 360
  361 RSWWHNSTRI IAPAMFISLL FGILDGIKAS AFGDMLPAWS QRLPLAEQGL AWLMPTVVMV 420
  421 ILAIIWDRAA GRQVTSSAH