YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BKRB2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTRSSLCPK TQAVVAVFWG PGCHLSTCIE MFNITTQALG SAHNGTFSEV NCPDTEWWSW  60
   61 LNAIQAPFLW VLFLLAALEN IFVLSVFCLH KTNCTVAEIY LGNLAAADLI LACGLPFWAI 120
  121 TIANNFDWLF GEVLCRVVNT MIYMNLYSSI CFLMLVSIDR YLALVKTMSM GRMRGVRWAK 180
  181 LYSLVIWSCT LLLSSPMLVF RTMKDYREEG HNVTACVIVY PSRSWEVFTN MLLNLVGFLL 240
  241 PLSIITFCTV RIMQVLRNNE MKKFKEVQTE KKATVLVLAV LGLFVLCWFP FQISTFLDTL 300
  301 LRLGVLSGCW NERAVDIVTQ ISSYVAYSNS CLNPLVYVIV GKRFRKKSRE VYQAICRKGG 360
  361 CMGESVQMEN SMGTLRTSIS VDRQIHKLQD WAGNKQ

Type	Start	End	Confidence
Cytoplasmic	1	13	0.80
Transmembrane Helix	14	34	0.80
Non-Cytoplasmic	35	65	0.93
Transmembrane Helix	66	89	0.92
Cytoplasmic	90	98	0.93
Transmembrane Helix	99	122	0.91
Non-Cytoplasmic	123	140	0.92
Transmembrane Helix	141	163	0.87
Cytoplasmic	164	177	0.95
Transmembrane Helix	178	200	0.87
Non-Cytoplasmic	201	230	0.95
Transmembrane Helix	231	253	0.91
Cytoplasmic	254	272	0.95
Transmembrane Helix	273	293	0.94
Non-Cytoplasmic	294	323	0.89
Transmembrane Helix	324	341	0.51
Cytoplasmic	342	396	0.54