YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lcl\|NC_016856.1_...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDTTVPLTL ISLLADGEFH SGEQLGERLG MSRAAINKHI QTLRDWGVDV FTVPGKGYSL  60
   61 PEPIQLLDAD RIHSQLDSGN VAVLPVIDST NQYLLDRIGE LRSGDACVAE YQQAGRGRRG 120
  121 RKWFSPFGAN LYLSMYWRLE QGPAAAIGLS LVIGIVMAEV LRKLGADKVR VKWPNDLYLL 180
  181 DRKLAGILVE LTGKTGDAAQ IVIGAGINMA MRRVEEDVIN QGWITLQEAG ITLDRNMLAA 240
  241 KLIYKLRAAL ELFEQEGLSP YLSRWKKLDN FIDRPVKLII GDKEIFGISR GIDTQGALLL 300
  301 EQDGVIKPWM GGEISLRSAE

Type	Start	End	Confidence
Signal Peptide	1	17	0.48
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	320	0.65