YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BDBC_OCEIH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLTKKAEN LLLLIWVQAF LALAGSLFYS EVMNYVPCEL CWYQRILMYP LVLIYGVAAI  60
   61 KKDISFALPG LFMSGIGLLV STYHYLVQHV SIFQEVGGAC SGSVPCNVIY VNYFGFISIP 120
  121 FMAGVAFLII FVLHLLILRE QGRKA

Type	Start	End	Confidence
Cytoplasmic	1	10	0.94
Transmembrane Helix	11	30	0.94
Non-Cytoplasmic	31	40	0.81
Transmembrane Helix	41	59	0.93
Cytoplasmic	60	65	0.84
Transmembrane Helix	66	87	0.92
Non-Cytoplasmic	88	115	0.92
Transmembrane Helix	116	138	0.92
Cytoplasmic	139	145	0.98