YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE41351
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEGGYLALQ SVLALVLLVV TAVAGSAPLL LLTFLKKKGK DQNDSGWLSY LSCFSGGVFM  60
   61 ATCFLDVMPH VQQTYGEILE TYNVEFRLPM NQLFICVGFF FVYLIEEITA KVFGSGGHGH 120
  121 SHGPPIPLTV DIKKEKVTSL VVEETAPWVV SDEKRNLLKS LTFAIAMSFH SLLEGFALGV 180
  181 QDSDAAIWTL FLSLLLHKSI EAFSVGLQIS RANTEKKGIV MCTILVYALM TPLGSVLGTL 240
  241 LQNTGDKSFG KDCTIVFLEA MAAGTFIYVT FLEILAAEKE NRFNSLKQLL CIGLGFMVIL 300
  301 ALQFFFGHEG HGHGHPDHGV PSPSALPSPS FSFAPAV

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.86
Transmembrane Helix	12	35	0.90
Cytoplasmic	36	45	0.95
Transmembrane Helix	46	68	0.91
Non-Cytoplasmic	69	87	0.89
Transmembrane Helix	88	105	0.91
Cytoplasmic	106	156	0.94
Transmembrane Helix	157	178	0.80
Non-Cytoplasmic	179	184	0.75
Transmembrane Helix	185	207	0.80
Cytoplasmic	208	218	0.87
Transmembrane Helix	219	241	0.91
Non-Cytoplasmic	242	254	0.86
Transmembrane Helix	255	276	0.90
Cytoplasmic	277	285	0.90
Transmembrane Helix	286	307	0.90
Non-Cytoplasmic	308	337	0.96