YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BCR_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.91
Transmembrane Helix	9	30	0.91
Non-Cytoplasmic	31	46	0.80
Transmembrane Helix	47	66	0.89
Cytoplasmic	67	76	0.83
Transmembrane Helix	77	98	0.93
Non-Cytoplasmic	99	105	0.74
Transmembrane Helix	106	123	0.97
Cytoplasmic	124	136	0.78
Transmembrane Helix	137	158	0.93
Non-Cytoplasmic	159	164	0.78
Transmembrane Helix	165	185	0.96
Cytoplasmic	186	215	0.96
Transmembrane Helix	216	239	0.88
Non-Cytoplasmic	240	250	0.89
Transmembrane Helix	251	273	0.89
Cytoplasmic	274	284	0.87
Transmembrane Helix	285	304	0.93
Non-Cytoplasmic	305	310	0.63
Transmembrane Helix	311	332	0.91
Cytoplasmic	333	345	0.78
Transmembrane Helix	346	365	0.92
Non-Cytoplasmic	366	371	0.74
Transmembrane Helix	372	390	0.97
Cytoplasmic	391	396	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTRQHSSFA IVFILGLLAM LMPLSIDMYL PALPVISAQF GVPAGSTQMT LSTYILGFAL  60
   61 GQLIYGPMAD SFGRKPVVLG GTLVFAAAAV ACALANTIDQ LIVMRFFHGL AAAAASVVIN 120
  121 ALMRDIYPKE EFSRMMSFVM LVTTIAPLMA PIVGGWVLVW LSWHYIFWIL ALAAILASAM 180
  181 IFFLIKETLP PERRQPFHIR TTIGNFAALF RHKRVLSYML ASGFSFAGMF SFLSAGPFVY 240
  241 IEINHVAPEN FGYYFALNIV FLFVMTIFNS RFVRRIGALN MFRSGLWIQF IMAAWMVISA 300
  301 LLGLGFWSLV VGVAAFVGCV SMVSSNAMAV ILDEFPHMAG TASSLAGTFR FGIGAIVGAL 360
  361 LSLATFNSAW PMIWSIAFCA TSSILFCLYA SRPKKR