YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BBR1_SCHCO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPEFAPVAF LSAASLALPL PWHWRAGNVA TLSIIAWLFI MNMIYGINAV IWAGSARITA  60
   61 VVYCDITTKL TIGGNFALPA ACLCLCIHLE RVASVRAAQT TAADKRRRTI FELAMCWLLP 120
  121 IIFMALHYVV QGHRFDIVED FGCRPATYYS IPAIFIVWVP PLTMAAASLV YASLAIRHFM 180
  181 HRRLSFAMHL QARSSALTTS RYLRLILMAI VQLVWLVVTT AYTLWFSSMT LNLRPWTTWA 240
  241 DVHSNFGRIQ TWPAIITPAV ILRGACTLWW MVPASTWIFV AFFAFGNDAV EEYKRVLNVV 300
  301 LSGARRALPE GFLSEKKRDL KGFSLPSFVK GSVPLGDSSS STRKDSLPDK AVLPVNRSVT 360
  361 MTTTTSTVVS SMPPPYSLPP PPPPQKYTSP LDSLDYSADA DRISISSSVD TSGYTIEILP 420
  421 ETPSTSSSTP PSPSSPQYPR SPSSQGSHVV DDYYYTSSPQ DSLPHDIPAP PSLPPPTHMP 480
  481 DEAHISPSHA VPSRPPAFPP YPFARDMRPA ASEPMSPRPI TYPSMSPTHR DIASVFPGGR 540
  541 R

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.66
Transmembrane Helix	6	24	0.73
Cytoplasmic	25	33	0.65
Transmembrane Helix	34	54	0.88
Non-Cytoplasmic	55	69	0.76
Transmembrane Helix	70	89	0.87
Cytoplasmic	90	108	0.93
Transmembrane Helix	109	130	0.92
Non-Cytoplasmic	131	153	0.92
Transmembrane Helix	154	180	0.82
Cytoplasmic	181	201	0.96
Transmembrane Helix	202	226	0.89
Non-Cytoplasmic	227	258	0.84
Transmembrane Helix	259	285	0.65
Cytoplasmic	286	541	0.82