YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AUR1_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSILRSKI IQKPYQLFHY YFLSEKAPGS TVSDLNFDTN IQTSLRKLKH HHWTVGEIFH  60
   61 YGFLVSILFF VFVVFPASFF IKLPIILAFA TCFLIPLTSQ FFLPALPVFT WLALYFTCAK 120
  121 IPQEWKPAIT VKVLPAMETI LYGDNLSNVL ATITTGVLDI LAWLPYGIIH FSFPFVLAAI 180
  181 IFLFGPPTAL RSFGFAFGYM NLLGVLIQMA FPAAPPWYKN LHGLEPANYS MHGSPGGLGR 240
  241 IDKLLGVDMY TTGFSNSSII FGAFPSLHSG CCIMEVLFLC WLFPRFKFVW VTYASWLWWS 300
  301 TMYLTHHYFV DLIGGAMLSL TVFEFTKYKY LPKNKEGLFC RWSYTEIEKI DIQEIDPLSY 360
  361 NYIPVNSNDN ESRLYTRVYQ ESQVSPPQRA ETPEAFEMSN FSRSRQSSKT QVPLSNLTNN 420
  421 DQVSGINEED EEEEGDEISS STPSVFEDEP QGSTYAASSA TSVDDLDSKR N

Type	Start	End	Confidence
Cytoplasmic	1	57	0.68
Transmembrane Helix	58	80	0.89
Non-Cytoplasmic	81	85	0.50
Transmembrane Helix	86	119	0.68
Cytoplasmic	120	139	0.57
Transmembrane Helix	140	158	0.51
Non-Cytoplasmic	159	165	0.56
Transmembrane Helix	166	185	0.92
Cytoplasmic	186	192	0.71
Transmembrane Helix	193	214	0.87
Non-Cytoplasmic	215	258	0.81
Transmembrane Helix	259	283	0.83
Cytoplasmic	284	287	0.61
Transmembrane Helix	288	302	0.52
Non-Cytoplasmic	303	303	0.29
Transmembrane Helix	304	326	0.67
Cytoplasmic	327	471	0.53