YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP6_TOBAC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRRIFLFDE DSLNSSVTSY TNASQSTTTI MDYSLKSSDT QGSSSGIFTD HPGLNPCSER  60
   61 IVELQYDIRL KLGALMPKES AQKVLEASEA LHGESNNIAF LEYLLEDLQQ NGVGGEAYKD 120
  121 AVDLSKDLVS SPLEQFEIIS LIPMKIGNLY FSFTNPSLFM LLTLSLVLLL VYFVTKKGGG 180
  181 NSVPNAWQSL VELIYDFVLN PVNEQIGGLS GNVKQKFSPR ISVTFTFSLF CNPQGMIPYS 240
  241 FTVTSHFLIT LGLSFSIFIG ITIVGFQKNG LHFLSFLLPA GVPLPLAPFL VLLELIPYCF 300
  301 RALSSGIRLF ANMMAGHSSV KILSGFAWTM LCMNDLLYFI GDLGPLFIVL ALTGLELGVA 360
  361 ISQAHVSTIL ICIYLNDAIN LHQSASFFII EQKRV

Type	Start	End	Confidence
Cytoplasmic	1	150	0.68
Transmembrane Helix	151	174	0.85
Non-Cytoplasmic	175	242	0.55
Transmembrane Helix	243	266	0.87
Cytoplasmic	267	272	0.39
Transmembrane Helix	273	298	0.78
Non-Cytoplasmic	299	308	0.33
Transmembrane Helix	309	332	0.65
Cytoplasmic	333	335	0.27
Transmembrane Helix	336	359	0.69
Non-Cytoplasmic	360	360	0.21
Transmembrane Helix	361	375	0.52
Cytoplasmic	376	395	0.63