YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AT1B3_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKETKKPFR QSVAEWRQFV YNPNSGEFLG RTAKSWGLIL LFYLVFYGFL AALFTFTMWV  60
   61 MLQTLSNDIP KYRDRISSPG LMISPKPDTA LEFYFNKSDA QSYAEYVSTL RKFLETYDDS 120
  121 KQSQNINCTP GKVFDQNDVA VKKACRFNLS ELGQCSGKED KTFGYSKGTP CVLVKMNRII 180
  181 GLKPEGEPYI QCTSKEPGAV EINYFPSGGL IDLMYFPYYG KTLHAHYLQP LVAVQLAINS 240
  241 NSTNEEIAIE CKILGSPNLK NEDDRDKFLG RIAFKVEMTE

Type	Start	End	Confidence
Cytoplasmic	1	38	0.91
Transmembrane Helix	39	61	0.93
Non-Cytoplasmic	62	280	0.93