YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KDPC_CALS4
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEEIKRTIK FTLVFMVLLG LVYPFVMTGI ANLLFPYQAK GSIIKVDGKP VGSELIGQKF  60
   61 TDPRWFMGRP SAVDYDATSS GGTNYALSNP KFHEELEKNI EEFLKKNPGV KRSEIPADIV 120
  121 TSSGSGLDPH ISPKAAYLQV KRVAKVNGLP EEVVKKLVDK NIEGRFLGLF GEPRVNVLKL 180
  181 NLSLLEEIKK HKK

Type	Start	End	Confidence
Cytoplasmic	1	10	0.85
Transmembrane Helix	11	33	0.85
Non-Cytoplasmic	34	193	0.96