YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATKC_RHILO
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKQIRPAIV MIVFFTVLTG LVYPLGMTGI AQALFPRQAN GSLIEKDGKV IGSELIGQAF  60
   61 ASDKYFHGRP SAAGNGYDAG ASGGSNLGPT NPKLIERIKG GAEKLKAENP NQPVPMDLVT 120
  121 TSGSGLDPQI SPEAAYFQVP RVAKARGIDE AKVKALVDGQ VEGRELGFMG EPVVNVLALN 180
  181 LALDAAK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.73
Transmembrane Helix	9	31	0.74
Non-Cytoplasmic	32	187	0.96