YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP4B_RABIT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALQEKKSC SQRMEEFRHY CWNPDTGQML GRTLSRWVWI SLYYVAFYVV MTGLFALCIY  60
   61 VLMQTIDPYT PDYQDQLKSP GVTLRPDVYG EKGLEIHYNI SDNRTWTSLT HTLRSFLAGY 120
  121 SPAAQVDNIN CTSKTYFFQE SFGAPNHTKF SCKFTADMLE NCSGLTDPSF GFKEGKPCFI 180
  181 IKMNRIVRFL PSNSTPPRVD CTFLDMPHQA LTPLQVEYYP PNGTFSLHYF PYYGKKAQPH 240
  241 YSNPLVAAKL LNVPTNTEVV VLCKILADHV TFDNPHDPYE GKVEFKLKIQ K

Type	Start	End	Confidence
Cytoplasmic	1	38	0.92
Transmembrane Helix	39	63	0.89
Non-Cytoplasmic	64	291	0.93