YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP4B_CANLF
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALQEKKSC SQRMEEFQRY CWNPDTGQML GRTLSRWVWI SLYYVAFYVV MTGIFALCIY  60
   61 TLMCTLDPYT PDYQDQLKSP GVTLRPDVYG EKGLDISYNV SDNRTWVDLV NILHNFLEGY 120
  121 SPTSQEDNIN CTSEKYFFQD VFGAPNHTKF SCKFMADMLQ NCSGLTDPNF GFAEGKPCFI 180
  181 IKMNRIVNFL PSNSTAPRAD CTFLDQHKDD RPLQVEYYPP NGTFSLRYFP YYGKKAQPHY 240
  241 SNPLVAAKLL NVPRNTEVLI VCKILADYVT FDNPHDPYEG KVEFKLTIQQ

Type	Start	End	Confidence
Cytoplasmic	1	39	0.88
Transmembrane Helix	40	63	0.89
Non-Cytoplasmic	64	290	0.91