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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AT2A3_CHICK
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAAHSVPVQ DVLSRFGVAE SCGLSPEQVR RNREKYGPNE LPAEERKSLW ELVLEQFEDL  60
   61 LVRILLMAAF LSFILAWFEE GEESTTAFVE PIVIIMILIA NAVVGVWQER NAESAIEALK 120
  121 EYEPEMGKVI RADRSGVQRI RARDIVPGDI VEVAVGDKVP ADIRIIEIRS TTLRVDQSIL 180
  181 TGESMSVIKH ADPIPDPRAV NQDKKNMLFS GTNIAAGKAV GIVIATGVYT EIGKIRNQMV 240
  241 ETEPEKTPLQ QKLDEFSQQL SKVIFLVCIA VWVINISHFS DPVHGGSWFR GAIYYFKTSV 300
  301 ALAVAAIPEG LPAVITTCLA LGTRRMAKKN AIVRSLPSVE TLGCTSVICS DKTGTLTTNQ 360
  361 MSVCRMFIME KVEGTQCSLH EFSITGSTYA PEGQILKDEK PVRCGQYDGL VELATICALC 420
  421 NDSSLDYNES KKVYEKVGEA TETALTCLVE KMNVFDTDTS KLSKVERANA CNSVIKHLMR 480
  481 KECTLEFSRD RKSMSVYCTP TGPGHNSAGS KMFVKGAPES VIERCTHVRV GTAKVPLTPP 540
  541 VREKILSQIR DWGMGTDTLR CLALATHDAP VQRETMQLHD STTFTHYETN LTFVGCVGML 600
  601 DPPRKEVTSS IEMCRKAGIR VIMITGDNKG TAVAICRRIG IFTESEDVAG KAYTGREFDE 660
  661 LSPEAQRQAC REARCFARVE PAHKSRIVEY LQSFNEITAM TGDGVNDAPA LKKAEIGIAM 720
  721 GSGTAVAKSA AEMVLSDDNF STIVSAVEEG RAIYNNMKQF IRYLISSNVG EVVCIFLTAI 780
  781 LGLPEALIPV QLLWVNLVTD GLPATALGFN PPDLDIMDKL PRNPKEPLIS GWLFFRYLAI 840
  841 GVYVGLATVG AATWWFLYDA EGPQVSFHQL RNFMRCTEDN PIFEGVNCEI FESRYPTTMA 900
  901 LSVLVTIEMC NALNSVSENQ SLLRMPPWLN IWLLGAIVMS MALHFFILYV KPMPLIFQVT 960
  961 PLSWPQWVVV LKISLPVILL DEGLKYLSRN HLEGILRTVR NTWSGEHQLK TCRTPEQGRR1020
 1021 GQEMNDTKEM LQAKGPQTCN SD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle