YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lcl\|NC_016856.1_...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNFLALTLS GTTPRVTQGK GAGFRWRWLG HGLLELTPDA PVDRALILSA GIHGNETAPV  60
   61 EMLDKLLSAL YSGSLTLTWR VLVVLGNPQA LAAGIRYCHS DMNRMFGGRW QSFAESDETR 120
  121 RARELELSLE TFFSSGQARV RWHLDLHTAI RGSHHLRFGV LPQRDRPWET DFLAWLGAAG 180
  181 LEALVFHQAP GGTFTHFSSE HFGALSCTLE LGKALPFRQN DLTQFNVTSQ ALSALLSGVE 240
  241 TSTSFSPPLR YRVVSQITRH SDKFALYMDA QTLNFTAFAK GTLLAEEGDK RVTVTHDVEY 300
  301 VLFPNPSVAC GLRAGLMLER LP

Type	Start	End	Confidence
Signal Peptide	1	19	0.61
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	322	0.94