YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARTQ_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEFFPLASA AGMTVGLAVC ALIVGLALAM FFAVWESAKW RPVAWAGSAL VTILRGLPEI  60
   61 LVVLFIYFGS SQLLLTLSDG FTINLGFVQI PVQMDIENFD VSPFLCGVIA LSLLYAAYAS 120
  121 QTLRGALKAV PVGQWESGQA LGLSKSAIFF RLVMPQMWRH ALPGLGNQWL VLLKDTALVS 180
  181 LISVNDLMLQ TKSIATRTQE PFTWYIVAAA IYLVITLLSQ YILKRIDLRA TRFERRPS

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.72
Transmembrane Helix	12	35	0.91
Cytoplasmic	36	44	0.75
Transmembrane Helix	45	75	0.70
Non-Cytoplasmic	76	100	0.71
Transmembrane Helix	101	119	0.93
Cytoplasmic	120	140	0.73
Transmembrane Helix	141	162	0.44
Non-Cytoplasmic	163	201	0.64
Transmembrane Helix	202	223	0.93
Cytoplasmic	224	238	0.88