YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254287035, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.96
Transmembrane Helix	20	41	0.91
Non-Cytoplasmic	42	47	0.71
Transmembrane Helix	48	67	0.91
Cytoplasmic	68	85	0.89
Transmembrane Helix	86	107	0.84
Non-Cytoplasmic	108	124	0.86
Transmembrane Helix	125	146	0.89
Cytoplasmic	147	155	0.84
Transmembrane Helix	156	176	0.96
Non-Cytoplasmic	177	197	0.90
Transmembrane Helix	198	221	0.88
Cytoplasmic	222	240	0.93
Transmembrane Helix	241	263	0.90
Non-Cytoplasmic	264	282	0.91
Transmembrane Helix	283	304	0.89
Cytoplasmic	305	331	0.91
Transmembrane Helix	332	353	0.93
Non-Cytoplasmic	354	358	0.81
Transmembrane Helix	359	380	0.91
Cytoplasmic	381	398	0.90
Transmembrane Helix	399	421	0.90
Non-Cytoplasmic	422	426	0.79
Transmembrane Helix	427	446	0.95
Cytoplasmic	447	457	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEGQQHGEQ LKRGLKNRHI QLIALGGAIG TGLFLGSASV IQSAGPGIIL GYAIAGFIAF  60
   61 LIMRQLGEMV VEEPVAGSFS HFAYKYWGSF AGFASGWNYW VLYVLVAMAE LTAVGKYIQF 120
  121 WYPEIPTWVS AAVFFVVINA INLTNVKVFG EMEFWFAIIK VIAVVAMIIF GGWLLFSGNG 180
  181 GPQATVSNLW DQGGFLPHGF TGLVMMMAII MFSFGGLELV GITAAEADNP EQSIPKATNQ 240
  241 VIYRILIFYI GSLAVLLSLM PWTRVTADTS PFVLIFHELG DTFVANALNI VVLTAALSVY 300
  301 NSCVYCNSRM LFGLAQQGNA PKALASVDKR GVPVNTILVS ALVTALCVLI NYLAPESAFG 360
  361 LLMALVVSAL VINWAMISLA HMKFRRAKQE QGVVTRFPAL LYPLGNWICL LFMAAVLVIM 420
  421 LMTPGMAISV YLIPVWLIVL GIGYLFKEKT AKAVKAH