YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AROB_CAMJR
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVEVKLKEN AYKVYIDELE ELEFDSKVFI LSNPKISGLH LKTLLSKIKA KEIFIATVKD  60
   61 GEEYKNLSTM EEILNQMFNS KLDRKSVLIS FGGGVISDMG GFAASIYQRG IDFINIPTTL 120
  121 LACVDAAVGG KTGVNNNFGK NLIGTFYQPK AVYCESFFLK TLSSRELAAG MAEFIKMAAM 180
  181 FDYSILDFIE KIDEKSFLNA TCENEIFTQI IAKSIELKSR VVEQDEKESR LRMLLNYGHT 240
  241 FAHVIENFTD YKLYLHGEAV AIGMVMANQL ALNLGLLDKM QSQRIKDILL KFGLPISYKI 300
  301 NNVDEFYEAF FMDKKSSNKK INFVLASPLG KGLIKGDISK EDIIATLREF Q

Type	Start	End	Confidence
Cytoplasmic	1	86	0.52
Transmembrane Helix	87	107	0.50
Non-Cytoplasmic	108	351	0.92