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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: agr-1
Protein type: Globular with Signal Peptide
Type Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLHNYFVSI FLFSCIVWTV FSSCLKPRPT RSYIHSLFEN SDVIIAGVIT GISYRVDSLY  60
   61 IENITVIPRR IYKGREYVEE NKNIVIGNIL ETEPCAHRLL ASDVRIFSLT NQQGVFLLDA 120
  121 PMIRVSLPIF DALFTISNKQ AHRKRRRTKQ AICEQSLCPF GSKCGLKTGV CECKARCRVV 180
  181 TDVVCGSDHV SYSSFCHLSV RSCVLAKNGV RLRVATKGPC KKRNPCEDLR CGPGEDCVVN 240
  241 QINGILLAKC VCPTQCPNYG DSVESSPVCS SHGVDYQSSC HLRHHACESK TNITVKFFGR 300
  301 CDPCHGHKCP NGQTCQLGVD RRPECKCSEQ CTMNSAHVCG TDGKTYLNEC FLKLAACKEQ 360
  361 KDILVWKRGN CDEAGSPCEK MECGFWGSCV VKPDRTAECE CPNRCEDVMR PVCATNGETF 420
  421 DNECEMKKKS CETKSMIKVK HQGTCGIGVC ATFDSCKKPQ VCVVVDGKPK CVCPSCTDEF 480
  481 KEVCGSDGKT YSNECRLQNA ACMAQKNIFV KYNSACEACK LKKEKCDFYS ACVVGENEKA 540
  541 ECKCPDDCPS YEMEEGKEVC GTDGVTYSSE CHMKKSACHQ SKFVMTAFEG KCDECLHVQC 600
  601 RYGEECRSGV CVCSYNCPAN PPLSARICGE NGVLYPSLCH LQLASCQKGA PISEMPPSHC 660
  661 HSSKTSFPDS CQCNRVGSFG HTCDETGQCK CRPGVAGIKC DHCLPSFWGI HLIAQGALSC 720
  721 RPCGCSAFGS SRSDCEQTTG KCECKNGALG DKCDLCPNGS MMTAGGCVSP AVYKTPRDCH 780
  781 SLRCFHGAKC VPSPSSFPDC ICPQSCNMNH LGIVANMTVC GSDGTTYSNL CELKMFACKH 840
  841 QIDVVPVSMG ICDDENFEVL DRLQREKNSN EKRLGSPCTR HEECEKLSAQ CITRPGRKSV 900
  901 CDCDDGWKSH LGICIEISKK RKSDQLELTT DINSDWYFSR KDINRFSKLS MHIHLKEKRE 960
  961 GILIRMVTED KKDLQISHEN RRIVIKVGKA RVDSLQTIAY NVSLELKWKR NEVHFKLNGE1020
 1021 VQKYTFEDVL DSSVKRIYVG TDGKWPRNRL NSIVGYLEID DEPVRIDEIK PFYMAPEISR1080
 1081 TLKFKENGFV QFENLQIDVR ERTRVEIVFK PYRTNGILFY WSVPSDPHTD FIAFAMIDAK1140
 1141 PHFVYELGSG LSYIRGEPIP LNSWHTVRIE RLAKDVSMFV NETLVKKHTS QSKNAHLDIS1200
 1201 KKDALYVGFV PEGIISHKVR KLNVPFEGEL QELRINELPI NLISGVSKEV MDKVDVMEIN1260
 1261 EKEISKCDGA SFDRKGSVVC RQHENDARGI HINEQDALVF PNNVTFSVGS SKSSNFSFDF1320
 1321 RTLKQFGVIW QEGAWSQADE GGDFLLVFIE EGKLYVGVNL GADVHLKPIS TNVTVADNHW1380
 1381 HSVSFRRKER KCELWVDSKK ILHVVASPGD VNLDSNGLVY LGGANPKKHK LLKSLNLSNK1440
 1441 FVGCVKNLKI FGAEVNLLVD SLKSIETPKY CYN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle