YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARAE_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	46	0.87
Non-Cytoplasmic	47	62	0.87
Transmembrane Helix	63	82	0.96
Cytoplasmic	83	89	0.86
Transmembrane Helix	90	110	0.93
Non-Cytoplasmic	111	115	0.81
Transmembrane Helix	116	137	0.93
Cytoplasmic	138	149	0.90
Transmembrane Helix	150	171	0.90
Non-Cytoplasmic	172	178	0.81
Transmembrane Helix	179	200	0.92
Cytoplasmic	201	257	0.98
Transmembrane Helix	258	280	0.90
Non-Cytoplasmic	281	296	0.92
Transmembrane Helix	297	318	0.94
Cytoplasmic	319	325	0.93
Transmembrane Helix	326	346	0.92
Non-Cytoplasmic	347	361	0.78
Transmembrane Helix	362	384	0.91
Cytoplasmic	385	394	0.93
Transmembrane Helix	395	419	0.80
Non-Cytoplasmic	420	426	0.68
Transmembrane Helix	427	446	0.92
Cytoplasmic	447	472	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTINTESAL TPRSLRDTRR MNMFVSVAAA VAGLLFGLDI GVIAGALPFI TDHFVLTSRL  60
   61 QEWVVSSMML GAAIGALFNG WLSFRLGRKY SLMAGAILFV LGSIGSAFAT SVEMLIAARV 120
  121 VLGIAVGIAS YTAPLYLSEM ASENVRGKMI SMYQLMVTLG IVLAFLSDTA FSYSGNWRAM 180
  181 LGVLALPAVL LIILVVFLPN SPRWLAEKGR HIEAEEVLRM LRDTSEKARE ELNEIRESLK 240
  241 LKQGGWALFK INRNVRRAVF LGMLLQAMQQ FTGMNIIMYY APRIFKMAGF TTTEQQMIAT 300
  301 LVVGLTFMFA TFIAVFTVDK AGRKPALKIG FSVMALGTLV LGYCLMQFDN GTASSGLSWL 360
  361 SVGMTMMCIA GYAMSAAPVV WILCSEIQPL KCRDFGITCS TTTNWVSNMI IGATFLTLLD 420
  421 SIGAAGTFWL YTALNIAFVG ITFWLIPETK NVTLEHIERK LMAGEKLRNI GV