YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AQPZ_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRKLAAECF GTFWLVFGGC GSAVLAAGFP ELGIGFAGVA LAFGLTVLTM AFAVGHISGG  60
   61 HFNPAVTIGL WAGGRFPAKE VVGYVIAQVV GGIVAAALLY LIASGKTGFD AAASGFASNG 120
  121 YGEHSPGGYS MLSALVVELV LSAGFLLVIH GATDKFAPAG FAPIAIGLAL TLIHLISIPV 180
  181 TNTSVNPARS TAVAIFQGGW ALEQLWFFWV VPIVGGIIGG LIYRTLLEKR D

Type	Start	End	Confidence
Cytoplasmic	1	9	0.92
Transmembrane Helix	10	29	0.95
Non-Cytoplasmic	30	36	0.71
Transmembrane Helix	37	60	0.85
Cytoplasmic	61	80	0.85
Transmembrane Helix	81	103	0.94
Non-Cytoplasmic	104	127	0.93
Transmembrane Helix	128	149	0.93
Cytoplasmic	150	158	0.76
Transmembrane Helix	159	178	0.95
Non-Cytoplasmic	179	204	0.94
Transmembrane Helix	205	227	0.92
Cytoplasmic	228	231	0.99