YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APMAP_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEADGLRQR RPLRPQVVTD DGQVPEVKEG SSFSGRVFRM TFLMLAVSLA IPLLGAMMLL  60
   61 ESPIDPQSFS FKEPPFMFGV LHPNTKLRQA ERLFENQLSG PESIVNIGDV LFTGTADGRV 120
  121 VKLENGEIET IARFGSGPCK TRDDEPTCGR PLGIRAGPNG TLFVVDAYKG LFEVNPQKRS 180
  181 VKLLLSSETP IEGKKMSFVN DLTVTRDGRK IYFTDSSSKW QRRDYLLLVM EATDDGRLLE 240
  241 YDTVTKEVKV LLDQLQFPNG VQLSPEEDFV LVAETTMARI RRVYVSGLMK GGADMFVENM 300
  301 PGFPDNIRPS SSGGYWVAAA TIRANPGFSM LDFLSDKPFI KRMIFKMFSQ ETVMKFVPRY 360
  361 SLVLEVSDSG AFRRSLHDPD GQVVTYVSEA HEHDGYLYLG SFRSPFICRL SLQSI

Type	Start	End	Confidence
Cytoplasmic	1	39	0.96
Transmembrane Helix	40	60	0.95
Non-Cytoplasmic	61	415	0.98