YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152013028
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLLKLKWTS SGVKDTPHTL LFIIITFYVF FMLEIVDANS WWSLAMNPLL IPEVYVIGGQ  60
   61 PLCSQLSGLS KGQKKLCQLY QDHMQYIGEG AKTGIRECQH QFRHRRWNCS TVDNSTVLGR 120
  121 VMHIGSRESA FAFAISAAGV LHAVSRACRE GALSSCGCSR ASRPKDLPRD WLWGGCGDNL 180
  181 NYGYRFSREF VDAREREKTF SKGSAESARQ MMNLHNNEAG RRIVSDLADV SCKCHGVSGS 240
  241 CSLKTCWLQL ADFRKVGDVL KEKYDSAAAM RMNGRGKLVQ MHSKFSPPSG QDLLYLQPSP 300
  301 DYCIRNSSSG SLGTQGRLCN KTSEGMDGCA LMCCGRGYDQ YKAELVERCH CKFHWCCYVR 360
  361 CKRCSSIVDQ YVCK

Type	Start	End	Confidence
Cytoplasmic	1	18	0.84
Transmembrane Helix	19	38	0.89
Non-Cytoplasmic	39	374	0.67