YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152012905, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.95
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	99	0.98
Transmembrane Helix	100	121	0.93
Cytoplasmic	122	130	0.86
Transmembrane Helix	131	152	0.92
Non-Cytoplasmic	153	170	0.90
Transmembrane Helix	171	194	0.81
Cytoplasmic	195	210	0.85
Transmembrane Helix	211	232	0.91
Non-Cytoplasmic	233	265	0.86
Transmembrane Helix	266	289	0.89
Cytoplasmic	290	305	0.92
Transmembrane Helix	306	329	0.87
Non-Cytoplasmic	330	349	0.89
Transmembrane Helix	350	371	0.94
Cytoplasmic	372	396	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIKTILSLA VIAHACSSHD GSGRNTERTD EQIEDNVLPV PAPKFKNGPK GAYECFLPPR  60
   61 NTSSRVLKLN TTPIPEPCHT SVDAVEFLKG PLVTRFMPSF YIIIILISLP LNALALVTFT 120
  121 CRIREKKPAV IYMSHLACVD LLFALLLPLK IHYQLNASDW LFGEAACRVL TAAYYCYMYC 180
  181 SILLMMCMSV DRLLGVALPI ASLTWRNARK ASFICTLVWL LSLTGTVPLL LMRQTVRIKD 240
  241 VGITCHDMLN ANDKTMLYYV YLFSILSCLY FFVPLVITLV SYSTIIYVLS VKSDRISSSS 300
  301 SNRTRAVIMT ISVLSEFVVC FAPTNGILLY HCVRLARRGK SGEGDSSYSA YMLAVCLGSA 360
  361 SVFLDPLLYY YGSSHYRKII KSVLRRKEQN NQPHVP