YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152012592, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNQEPTAAF NPIYLFLFIS VGLNIFLVYS GYLSPDYNTL SYTTTCTTLK EKPLENSTIL  60
   61 LIWIWPFGKK FDLNSCSAKF NIDGCHLTVG RELYDDAHGV LINHRDIKND LSNLPTKPRP 120
  121 FFQKWIWMHF ESPENTRRLD GLNNLFNVTL NYRRDADIVL REQFIIKSED TEDKIFPQVL 180
  181 DKKDKLVCWI VSNWNERHER VAYFNELKKH INIYALGRHF GKQLSDTQYK EALTRCKFYL 240
  241 SFENTNLHYD YITEKLFNPL TLGSVPVALG APRYIYERFV PKDAFIHVKD FSSPQKLAEH 300
  301 LLALDKNVDE YKKYFQWRKH FEIKLVDYPE EHACRACQYI RAKKDYQVFR NLNNWYWDAI 360
  361 NDGT

Type	Start	End	Confidence
Cytoplasmic	1	11	0.79
Transmembrane Helix	12	33	0.88
Non-Cytoplasmic	34	364	0.93