YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APOA1_COTJA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGVLVTLAV LFLTGTQARS FWQHDDPQTP LDRIRDMLDV YLETVKASGK DAISQFESSA  60
   61 VGKQLDLKLA DNLDTLSAAA AKLREDMTPY YREVREMWLK DTEALRAELT KDLEEVKEKI 120
  121 RPFLDQFSAK WTEEVEQYRQ RLAPVAQELK DLTKQKVELM QAKLTPVAEE VRDRLREQVE 180
  181 ELRKNLAPYS SELRQKLSQK LEEIRERGIP QASEYQAKVV EQLSNLREKM TPLVQEFKER 240
  241 LTPYAENLKN RLIDLLDEVQ KTMA

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	264	0.99