YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APOA1_DANRE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFVALALTL LLALGSQANL FQADAPTQLE HYKAAALVYL NQVKDQAEKA LDNLDGTDYE  60
   61 QYKLQLSESL TKLQEYAQTT SQALTPYAET ISTQLMENTK QLRERVMTDV EDLRSKLEPH 120
  121 RAELYTALQK HIDEYREKLE PVFQEYSALN RQNAEQLRAK LEPLMDDIRK AFESNIEETK 180
  181 SKVVPMVEAV RTKLTERLED LRTMAAPYAE EYKEQLVKAV EEAREKIAPH TQDLQTRMEP 240
  241 YMENVRTTFA QMYETIAKAI QA

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	262	0.99