YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ANSP_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.98
Transmembrane Helix	35	54	0.93
Non-Cytoplasmic	55	62	0.67
Transmembrane Helix	63	82	0.93
Cytoplasmic	83	113	0.85
Transmembrane Helix	114	134	0.87
Non-Cytoplasmic	135	143	0.76
Transmembrane Helix	144	163	0.93
Cytoplasmic	164	172	0.79
Transmembrane Helix	173	195	0.91
Non-Cytoplasmic	196	217	0.89
Transmembrane Helix	218	240	0.85
Cytoplasmic	241	259	0.92
Transmembrane Helix	260	284	0.87
Non-Cytoplasmic	285	302	0.91
Transmembrane Helix	303	325	0.89
Cytoplasmic	326	350	0.89
Transmembrane Helix	351	372	0.93
Non-Cytoplasmic	373	379	0.83
Transmembrane Helix	380	401	0.92
Cytoplasmic	402	420	0.89
Transmembrane Helix	421	442	0.91
Non-Cytoplasmic	443	448	0.82
Transmembrane Helix	449	468	0.96
Cytoplasmic	469	499	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKHDTDTSD QHAAKRRWLN AHEEGYHKAM GNRQVQMIAI GGAIGTGLFL GAGARLQMAG  60
   61 PALALVYLIC GLFSFFILRA LGELVLHRPS SGSFVSYARE FLGEKAAYVA GWMYFINWAM 120
  121 TGIVDITAVA LYMHYWGAFG GVPQWVFALA ALTIVGTMNM IGVKWFAEME FWFALIKVLA 180
  181 IVTFLVVGTV FLGSGQPLDG NTTGFHLITD NGGFFPHGLL PALVLIQGVV FAFASIEMVG 240
  241 TAAGECKDPQ TMVPKAINSV IWRIGLFYVG SVVLLVMLLP WSAYQAGQSP FVTFFSKLGV 300
  301 PYIGSIMNIV VLTAALSSLN SGLYCTGRIL RSMAMGGSAP SFMAKMSRQH VPYAGILATL 360
  361 VVYVVGVFLN YLVPSRVFEI VLNFASLGII ASWAFIIVCQ MRLRKAIKEG KAADVSFKLP 420
  421 GAPFTSWLTL LFLLSVLVLM AFDYPNGTYT IAALPIIGIL LVIGWFGVRK RVAEIHSTAP 480
  481 VVEEDEEKQE IVFKPETAS