YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMPG_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.91
Transmembrane Helix	16	37	0.91
Non-Cytoplasmic	38	45	0.80
Transmembrane Helix	46	65	0.92
Cytoplasmic	66	81	0.90
Transmembrane Helix	82	101	0.95
Non-Cytoplasmic	102	108	0.81
Transmembrane Helix	109	128	0.96
Cytoplasmic	129	148	0.84
Transmembrane Helix	149	167	0.96
Non-Cytoplasmic	168	174	0.86
Transmembrane Helix	175	195	0.93
Cytoplasmic	196	224	0.92
Transmembrane Helix	225	245	0.86
Non-Cytoplasmic	246	261	0.76
Transmembrane Helix	262	282	0.91
Cytoplasmic	283	288	0.83
Transmembrane Helix	289	310	0.90
Non-Cytoplasmic	311	321	0.80
Transmembrane Helix	322	344	0.90
Cytoplasmic	345	353	0.74
Transmembrane Helix	354	374	0.89
Non-Cytoplasmic	375	382	0.77
Transmembrane Helix	383	402	0.96
Cytoplasmic	403	422	0.91
Transmembrane Helix	423	446	0.91
Non-Cytoplasmic	447	460	0.85
Transmembrane Helix	461	483	0.89
Cytoplasmic	484	491	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQYLRIFQ QPRSAILLIL GFASGLPLAL TSGTLQAWMT VENIDLKTIG FFSLVGQAYV  60
   61 FKFLWSPLMD RYTPPFFGRR RGWLLATQIL LLVAIAAMGF LEPGTQLRWM AALAVVIAFC 120
  121 SASQDIVFDA WKTDVLPAEE RGAGAAISVL GYRLGMLVSG GLALWLADKW LGWQGMYWLM 180
  181 AALLIPCIIA TLLAPEPTDT IPVPKTLEQA VVAPLRDFFG RNNAWLILLL IVLYKLGDAF 240
  241 AMSLTTTFLI RGVGFDAGEV GVVNKTLGLL ATIVGALYGG ILMQRLSLFR ALLIFGILQG 300
  301 ASNAGYWLLS ITDKHLYSMG AAVFFENLCG GMGTSAFVAL LMTLCNKSFS ATQFALLSAL 360
  361 SAVGRVYVGP VAGWFVEAHG WSTFYLFSVA AAVPGLILLL VCRQTLEYTR VNDNFISRTA 420
  421 YPAGYAFAMW TLAAGVSLLA VWLLLLTMDA LDLTHFSFLP ALLEVGVLVA LSGVVLGGLL 480
  481 DYLALRKTHL T