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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AMA1_PLAFF
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.55
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLYCVLLL SAFEFTYMIN FGRGQNYWEH PYQKSDVYHP INEHREHPKE YQYPLHQEHT  60
   61 YQQEDSGEDE NTLQHAYPID HEGAEPAPQE QNLFSSIEIV ERSNYMGNPW TEYMAKYDIE 120
  121 EVHGSGIRVD LGEDAEVAGT QYRLPSGKCP VFGKGIIIEN SNTTFLTPVA TGNQYLKDGG 180
  181 FAFPPTEPLM SPMTLDEMRH FYKDNKYVKN LDELTLCSRH AGNMIPDNDK NSNYKYPAVY 240
  241 DDKDKKCHIL YIAAQENNGP RYCNKDESKR NSMFCFRPAK DISFQNYTYL SKNVVDNWEK 300
  301 VCPRKNLQNA KFGLWVDGNC EDIPHVNEFS AIDLFECNKL VFELSASDQP KQYEQHLTDY 360
  361 EKIKEGFKNK NASMIKSAFL PTGAFKADRY KSHGKGYNWG NYNTETQKCE IFNVKPTCLI 420
  421 NNSSYIATTA LSHPIEVEHN FPCSLYKNEI MKEIERESKR IKLNDNDDEG NKKIIAPRIF 480
  481 ISDDKDSLKC PCDPEIVSNS TCNFFVCKCV ERRAEVTSNN EVVVKEEYKD EYADIPEHKP 540
  541 TYDKMKIIIA SSAAVAVLAT ILMVYLYKRK GNAEKYDKMD EPQHYGKSNS RNDEMLDPEA 600
  601 SFWGEEKRAS HTTPVLMEKP YY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle