YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALGI_PSESM
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.77
Transmembrane Helix	7	24	0.95
Non-Cytoplasmic	25	39	0.79
Transmembrane Helix	40	61	0.88
Cytoplasmic	62	77	0.72
Transmembrane Helix	78	96	0.95
Non-Cytoplasmic	97	114	0.80
Transmembrane Helix	115	138	0.84
Cytoplasmic	139	149	0.77
Transmembrane Helix	150	170	0.79
Non-Cytoplasmic	171	238	0.78
Transmembrane Helix	239	261	0.78
Cytoplasmic	262	310	0.73
Transmembrane Helix	311	334	0.82
Non-Cytoplasmic	335	354	0.58
Transmembrane Helix	355	374	0.92
Cytoplasmic	375	380	0.49
Transmembrane Helix	381	396	0.30
Non-Cytoplasmic	397	403	0.55
Transmembrane Helix	404	424	0.78
Cytoplasmic	425	487	0.80
Transmembrane Helix	488	510	0.82
Non-Cytoplasmic	511	518	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFSSNVFLF MFLPIFLGLY YLSGQRYRNL LLLIASYIFY AWWRVDFLAL FIGVTVWNYW  60
   61 IGLKVGAAGV RTKPAQRWLL LGVIVDLCIL GYFKYANFGV DSINAAMTSM GLEPFILTHV 120
  121 LLPIGISFYV FESISYIIDV YRGDTPATRN LIDFAAFVAI FPHLIAGPVL RFRDLADQFN 180
  181 NRTHTLDKFS EGATRFMQGF IKKVFIADTL AIVADHCFAL QNPTTGDAWL GALAYTAQLY 240
  241 FDFSGYSDMA IGLGLMMGFR FMENFKQPYI SQSITEFWRR WHISLSTWLR DYLYITLGGN 300
  301 RGGKVATYRN LFLTMLLGGL WHGANVTYII WGAWHGMWLA IEKAVGINTK PYSFNVIRWA 360
  361 LTFLLVVIGW VIFRSENLHV AGRMYGAMFS FGDWQLSELN RASLTGLQVA TLVVAYATLA 420
  421 FFGLRDFYQN REKDSGKSAR ADGPATEQPG TIKAVPGDAP GSLHLPGYTV GSEAQVQPAY 480
  481 WVADWPRYAM RALILLLFVA SILKLSAQSF SPFLYFQF