YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ADT_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEQQKVLGM PPFVADFLMG GVSAAVSKTA AAPIERIKLL VQNQDEMIRA GRLDRRYNGI  60
   61 IDCFKRTTAD EGVMALWRGN TANVIRYFPT QALNFAFRDK FKKMFGYKKD VDGYWKWMAG 120
  121 NLASGGAAGA TSLLFVYSLD YARTRLANDA KSAKKGGERQ FNGLVDVYRK TIASDGIAGL 180
  181 YRGFGPSVAG IVVYRGLYFG LYDSIKPVLL VGDLKNNFLA SFALGWCVTT AAGIASYPLD 240
  241 TIRRRMMMTS GEAVKYKSSF DAASQIVAKE GVKSLFKGAG ANILRGVAGA GVLSIYDQLQ 300
  301 VLLFGKAFKG GSG

Type	Start	End	Confidence
Cytoplasmic	1	12	0.63
Transmembrane Helix	13	32	0.48
Non-Cytoplasmic	33	116	0.50
Transmembrane Helix	117	137	0.58
Cytoplasmic	138	177	0.80
Transmembrane Helix	178	198	0.80
Non-Cytoplasmic	199	217	0.90
Transmembrane Helix	218	239	0.93
Cytoplasmic	240	313	0.81