YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACOD_MESAU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGHLLQEEM TSSYTTTTTT ITEPPSESLQ KTVPLYLEED IRPEMKEDIY DPSYQDEEGP  60
   61 PPKLEYVWRN IILMALLHLG ALYGLVLVPS SKVYTLLWAF VYYVISIEGI GAGVHRLWSH 120
  121 RTYKARLPLR IFLIIANTMA FQNDVYEWAR DHRAHHKFSE TYADPHDSRR GFFFSHVGWL 180
  181 LVRKHPAVKE KGGKLDMSDL KAEKLVMFQR RYYKPAILLM CFILPTFVPW YFWGEAFVNS 240
  241 LCVSTFLRYT LVLNATWLVN SAAHLYGYRP YDKNIDPREN ALVSLGCLGE GFHNYHHAFP 300
  301 YDYSASEYRW HINFTTFFID CMAALGLAYD RKKVSKAAVL ARIKRTGDGS CKSG

Type	Start	End	Confidence
Cytoplasmic	1	66	0.99
Transmembrane Helix	67	88	0.89
Non-Cytoplasmic	89	95	0.79
Transmembrane Helix	96	118	0.90
Cytoplasmic	119	211	0.96
Transmembrane Helix	212	233	0.89
Non-Cytoplasmic	234	245	0.82
Transmembrane Helix	246	268	0.56
Cytoplasmic	269	280	0.59
Transmembrane Helix	281	296	0.28
Non-Cytoplasmic	297	309	0.56
Transmembrane Helix	310	329	0.53
Cytoplasmic	330	354	0.86