YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|757860
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNEAPTAS PVAETAAGGK DVVTDAARRP NSEPKKVHIT DTPITLANWH KHISWLNVTL  60
   61 IIAIPIYGLV QAYWVPLHLK TALWAVVYYF MTGLGITAGY HRLWAHCSYS ATLPLKIYLA 120
  121 AVGGGAVEGS IRWWARGHRA HHRYTDTDKD PYSVRKGLLY SHIGWMVMKQ NPKRIGRTEI 180
  181 TDLNEDPVVV WQHRNYLKVV IFMGIVFPML VSGLGWGDWF GGFIYAGILR IFFVQQATFC 240
  241 VNSLAHWLGD QPFDDRNSPR DHIVTALVTL GEGYHNFHHE FPSDYRNAIE WHQYDPTKWT 300
  301 IWIWKQLGLA YDLKQFRANE IEKGRVQQLQ KKIDQRRAKL DWGIPLEQLP VIEWDDYVDQ 360
  361 AKNGRGLIAI AGVVHDVTDF IKDHPGGKAM INSGIGKDAT AMFNGGVYNH SNAAHNQLST 420
  421 MRVGVIRGGC EVEIWKRAQK ENKEVESVRD EYGNRIVRAG AQVTKIPEPI TTADAA

Type	Start	End	Confidence
Cytoplasmic	1	52	0.59
Transmembrane Helix	53	75	0.88
Non-Cytoplasmic	76	81	0.49
Transmembrane Helix	82	104	0.86
Cytoplasmic	105	198	0.55
Transmembrane Helix	199	220	0.87
Non-Cytoplasmic	221	225	0.38
Transmembrane Helix	226	248	0.60
Cytoplasmic	249	476	0.50