YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACKA_SHEON
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKLVLVLN CGSSSLKFAV IDAQTGDDQI SGLAECFGLE DSRIKWKING EKHESSLGAF  60
   61 TAHREAVEFI VNKILAGQPE LAAQIQAVGH RIVHGGEKFT RSVIIDEHVI KGIEECSSLA 120
  121 PLHNPAHLIG IRAAMASFPK LPQVAVFDTA FHQSMPERSF IYALPYKLYR EHGIRRYGMH 180
  181 GTSHLFVSRE AAKVLKKPLA ETNVICAHLG NGASVTAVKG GKSVDTSMGL TPLEGLVMGT 240
  241 RCGDIDPSII YHLVHQLGYT LEEVNNLMNK QSGLLGISEL TNDCRGIEEG YADGHKGATL 300
  301 ALEIFCYRLA KYIASYTVPL GRLDAVVFTG GIGENSDIIR EKVLNMLQIF NFHVDSERNK 360
  361 AARFGKKGII TADNSTVAMV IPTNEEWVIA EDSIKLITK

Type	Start	End	Confidence
Signal Peptide	1	19	0.77
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	399	0.99