YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AT8A1_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.76
Transmembrane Helix	73	90	0.58
Non-Cytoplasmic	91	98	0.67
Transmembrane Helix	99	118	0.60
Cytoplasmic	119	297	0.78
Transmembrane Helix	298	319	0.96
Non-Cytoplasmic	320	339	0.74
Transmembrane Helix	340	363	0.81
Cytoplasmic	364	845	0.81
Transmembrane Helix	846	864	0.73
Non-Cytoplasmic	865	876	0.66
Transmembrane Helix	877	896	0.90
Cytoplasmic	897	924	0.93
Transmembrane Helix	925	945	0.92
Non-Cytoplasmic	946	961	0.90
Transmembrane Helix	962	983	0.89
Cytoplasmic	984	989	0.87
Transmembrane Helix	990	1014	0.84
Non-Cytoplasmic	1015	1032	0.82
Transmembrane Helix	1033	1054	0.89
Cytoplasmic	1055	1149	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTMRRTVSE IRSRAEGYEK TDDVSEKTSL ADQEEIRTIF INQPQLTKFC NNHVSTAKYN  60
   61 IITFLPRFLY SQFRRAANSF FLFIALLQQI PDVSPTGRYT TLVPLLFILA VAAIKEIIED 120
  121 IKRHKADNAV NKKQTQVLRN GAWEIVHWEK VNVGDIVIIK GKEYIPADTV LLSSSEPQAM 180
  181 CYIETSNLDG ETNLKIRQGL PATSDIKDID SLMRLSGRIE CESPNRHLYD FVGNIRLDGR 240
  241 STVPLGADQI LLRGAQLRNT QWVHGIVVYT GHDTKLMQNS TSPPLKLSNV ERITNVQILI 300
  301 LFCILIAMSL VCSVGSAIWN RRHSGRDWYL NLNYGGANNF GLNFLTFIIL FNNLIPISLL 360
  361 VTLEVVKFTQ AYFINWDLDM HYEPTDTAAM ARTSNLNVEL GQVKYIFSDK TGTLTCNVMQ 420
  421 FKKCTIAGVA YGQNSQFGDE KTFSDSSLLE NLQNNHPTAP IICEFLTMMA VCHTAVPERE 480
  481 GDKIIYQAAS PDEGALVRAA KQLNFVFTGR TPDSVIIDSL GQEERYELLN VLEFTSARKR 540
  541 MSVIVRTPSG KLRLYCKGAD TVIYDRLAET SKYKEITLKH LEQFATEGLR TLCFAVAEIS 600
  601 ESDFQEWRAV YHRASTSVQN RLLKLEESYE LIEKNLQLLG ATAIEDKLQD QVPETIETLM 660
  661 KADIKIWILT GDKQETAINI GHSCKLRRKN MGMIVINEGS LDGTRETLSR HCTTLGDALR 720
  721 KENDFALIID GKTLKYALTF GVRQYFLDLA LSCKAVICCR VSPLQKSEVV EMVKKQVKVI 780
  781 TLAIGDGAND VSMIQTAHVG VGISGNEGLQ AANSSDYSIA QFKYLKNLLM VHGAWNYNRG 840
  841 SKCILYCFYK NIVLYIIEIW FAFVNGFSGQ ILFERWCIGL YNVMFTAMPP LTLGIFERSC 900
  901 RKEYMLKYPE LYKTSQNALD FNTKVFWVHC LNGLFHSVIL FWFPLKALQY GTVFENGRTS 960
  961 DYLLLGNFVY TFVVITVCLK AGLETSYWTW FSHIAIWGSI ALWVVFFGIY SSLWPAVPMA1020
 1021 PDMSGEAAML FSSGVFWMGL LFIPVASLLL DVVYKVIKRT AFKTLVDEVQ ELEAKSQDPG1080
 1081 AVVLGKSLTE RAQLLKNVFK KNHVNLYRSE SLQQNLLHGY AFSQDENGIV SQSEVIRAYD1140
 1141 TTKQRPDEW